[guided]The point of this step is to control how the residual graph changes. An augmentation can delete saturated residual arcs and can create reverse residual arcs, so it is not immediate that shortest paths from $s$ cannot become shorter. We prove exactly that.
Fix an augmentation index $k$. For each vertex $x\in V$, $d_k(x)$ is the shortest number of residual arcs needed to reach $x$ from $s$ before the augmentation, and $d_{k+1}(x)$ is the corresponding distance after the augmentation. We prove
\begin{align*}
d_{k+1}(x)\geq d_k(x).
\end{align*}
If $x$ is not reachable from $s$ in $G_{k+1}$, then $d_{k+1}(x)=\infty$, so the inequality holds. Otherwise, choose a shortest path
\begin{align*}
Q:\{0,1,\dots,r\}\to V
\end{align*}
from $s$ to $x$ in $G_{k+1}$, where $Q(0)=s$, $Q(r)=x$, and $r=d_{k+1}(x)$. Assume toward a contradiction that some vertex on this path became closer to $s$. Let $j$ be the first index on $Q$ for which
\begin{align*}
d_{k+1}(Q(j))<d_k(Q(j)).
\end{align*}
This first index is not $0$, because $Q(0)=s$ and the distance from $s$ to itself is always $0$. Define $a=Q(j-1)$ and $b=Q(j)$. Since $a$ occurs just before the first vertex whose distance allegedly decreased, its old distance did not exceed its new distance:
\begin{align*}
d_k(a)\leq d_{k+1}(a)=j-1.
\end{align*}
Now inspect the residual arc $(a,b)$ used by $Q$. If this arc already existed before the augmentation, namely if $(a,b)\in A_k$, then in $G_k$ we could take a shortest path from $s$ to $a$ and then traverse $(a,b)$. This gives
\begin{align*}
d_k(b)\leq d_k(a)+1\leq j=d_{k+1}(b),
\end{align*}
which contradicts the assumption that $b$ became closer.
Therefore $(a,b)$ is a genuinely new residual arc. The only way a residual arc appears after augmenting is that the algorithm sent positive additional flow through the opposite residual arc. Hence $(b,a)$ lay on the chosen augmenting path $P_k$ in $G_k$. Since Edmonds-Karp chose $P_k$ to be a shortest path from $s$ to $t$, every prefix of $P_k$ must also be shortest to its endpoint; if a prefix could be shortened, replacing it would shorten the whole $s$-$t$ path. Thus the vertices along $P_k$ occur in increasing distance from $s$. In particular, if $(b,a)$ is an arc of $P_k$, then
\begin{align*}
d_k(a)=d_k(b)+1.
\end{align*}
Together with $d_k(a)\leq j-1$, this implies
\begin{align*}
d_k(b)\leq j-2<j=d_{k+1}(b),
\end{align*}
which again contradicts the assumption that $d_{k+1}(b)<d_k(b)$. Both possibilities for $(a,b)$ lead to contradictions, so every residual shortest-path distance from $s$ is nondecreasing.[/guided]