[guided]The point of introducing $h_t$ is that it turns the logarithmic derivative of $Z(t)$ into an expectation with respect to a probability density. Since
\begin{align*}
h_t(x)=\frac{e^{\lambda t u(t,x)}}{Z(t)}
\end{align*}
and
\begin{align*}
Z(t)=\int_{\mathbb R^n}e^{\lambda t u(t,x)}\,d\nu(x),
\end{align*}
we have
\begin{align*}
\int_{\mathbb R^n}h_t\,d\nu=1.
\end{align*}
The boundedness of $u$ controls the exponential factor, but we also need a bound on the time derivative. Let $L:=\operatorname{Lip}(\varphi)$. The Hopf-Lax regularity statement used above gives $|\partial_tu(t,x)|\le L^2/2$ for a.e. $(t,x)$. Hence, on every compact time interval $[a,1]\subset(0,1]$,
\begin{align*}
\left|\lambda\bigl(u(t,x)+t\partial_tu(t,x)\bigr)e^{\lambda t u(t,x)}\right|\le \lambda\left(\|\varphi\|_\infty+\frac{L^2}{2}\right)e^{\lambda\|\varphi\|_\infty}.
\end{align*}
The right-hand side is a finite constant and is integrable with respect to the probability measure $\nu$. Dominated differentiation on $[a,1]$ is therefore justified, and since $a\in(0,1)$ is arbitrary the derivative formula holds for a.e. $t\in(0,1]$.
Differentiate $Z(t)$:
\begin{align*}
Z'(t)=\lambda\int_{\mathbb R^n}\bigl(u(t,x)+t\partial_tu(t,x)\bigr)e^{\lambda t u(t,x)}\,d\nu(x).
\end{align*}
Dividing by $Z(t)$ rewrites this as
\begin{align*}
\frac{Z'(t)}{Z(t)}=\lambda\int_{\mathbb R^n}\bigl(u(t,x)+t\partial_tu(t,x)\bigr)h_t(x)\,d\nu(x).
\end{align*}
Since
\begin{align*}
\Phi(t)=\frac{1}{\lambda t}\log Z(t),
\end{align*}
we obtain
\begin{align*}
\Phi'(t)=-\frac{1}{\lambda t^2}\log Z(t)+\frac{1}{\lambda t}\frac{Z'(t)}{Z(t)}.
\end{align*}
Substituting the formula for $Z'(t)/Z(t)$ gives
\begin{align*}
\Phi'(t)=\int_{\mathbb R^n}\partial_tu(t,x)h_t(x)\,d\nu(x)+\frac{1}{t}\int_{\mathbb R^n}u(t,x)h_t(x)\,d\nu(x)-\frac{1}{\lambda t^2}\log Z(t).
\end{align*}
The last two terms are exactly the entropy of $h_t\nu$ divided by $\lambda t^2$, because
\begin{align*}
\log h_t(x)=\lambda t u(t,x)-\log Z(t).
\end{align*}
Thus
\begin{align*}
\operatorname{Ent}_\nu(h_t\nu)=\lambda t\int_{\mathbb R^n}u(t,x)h_t(x)\,d\nu(x)-\log Z(t),
\end{align*}
and hence
\begin{align*}
\Phi'(t)=\int_{\mathbb R^n}\partial_tu(t,x)h_t(x)\,d\nu(x)+\frac{1}{\lambda t^2}\operatorname{Ent}_\nu(h_t\nu).
\end{align*}[/guided]